HsaEX0014882 @ hg19
Exon Skipping
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]
Coordinates
chr9:131196381-131198184:+
Coord C1 exon
chr9:131196381-131196508
Coord A exon
chr9:131196689-131196892
Coord C2 exon
chr9:131197932-131198184
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCCCTTGGTGTCACTTACAGCTA
3' ss Score
9.55
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTGGTTGCCAGGGGCCTGGCCCGGGTCCTGGTGTTTGAGGATGACGTGCGCTTTGAGAGCAACTTCAGGGGGCGGCTGGAGCGGCTGATGGAGGATGTGGAGGCAGAGAAACTGTCTTGGGACCTGAT
Seq A exon
CTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAGACGGCCGTGGAGGGGCTGCCGGGCCTGGTGGTGGCTGGGTACTCCTACTGGACGCTGGCCTATGCCCTGCGTCTGGCGGGTGCCCGCAAGCTGCTGGCCTCACAGCCTCTGCGCCGCATGCTGCCCGTGGACGAGTTCCTGCCCATCATGTTCGACCAGCACCCCAA
Seq C2 exon
CGAGCAGTACAAGGCACACTTCTGGCCACGGGACCTGGTGGCCTTCTCCGCCCAGCCCCTGCTCGCTGCCCCTACCCACTATGCCGGGGACGCCGAGTGGCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACAGCGGCCGCCTCATCAGCTGGAGCGGCTCCCAAAAGACCCTGCGCAGCCCCCGCCTGGACCTGACTGGCAGCAGCGGGCACAGCCTCCAACCCCAGCCCCGAGATGAGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATGTGGAGGCAGAGAA
R:
CTAGAGCTCATCTCGGGGCTG
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)