GgaEX1014905 @ galGal3
Exon Skipping
Gene
ENSGALG00000004986 | CERCAM
Description
NA
Coordinates
chr17:5563718-5564738:-
Coord C1 exon
chr17:5564611-5564738
Coord A exon
chr17:5564343-5564546
Coord C2 exon
chr17:5563718-5563859
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTGACCGCTCACCCTGCAGCTA
3' ss Score
9.13
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCGTGTCCCAGGGGCTGGAGCGGGTGCTGGTCTTTGAGGACGATGTACGCTTCGAGGTGTCCTTCCCAGCACGGCTGCAGCGGCTGATGGAGGAACTGGAGGAGGCACGGCACGACTGGGACCTCAT
Seq A exon
CTACCTGGGGAGGAAGCAGGTGAATGCAGAGGATGAAGCTCCTGTGGAGGGTGTCCAGAACCTGGTGGTAGCCGGGTATTCCTACTGGACGCTGGCGTACGCCATCTCCCTCCGTGGCGCCCAGAAGCTGCTGGCTGCCAAGCCCCTCTCCAAAATGCTGCCTGTGGATGAGTTCCTGCCCATCATGTACGACAAGCACCCCAA
Seq C2 exon
CGAGGACTACAAGAGGCACTTTGCCCCACGGGAAACGCAGGTGTTTTCGGCTCACCCACTCCTGGTTTATCCCACCCACTACGCCGGGGACAGCAACTGGCTGAGCGACACAGAGACCTCCACCATCTGGGATGATGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGTCCCAGGGGCTG
R:
GGAGTCATCATCCCAGATGGT
Band lengths:
270-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]