RnoEX0020278 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8442380-8444016:+
Coord C1 exon
chr3:8442380-8442507
Coord A exon
chr3:8442682-8442885
Coord C2 exon
chr3:8443764-8444016
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGCTATCATTTGCAGCTA
3' ss Score
9.37
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
GTGGTTGCCAAGGGCCTGGCCCGGGTGGTGGTGTTCGAGGATGATGTGCGCTTTGAGGACAACTTCCGGAAGCGTCTGGAACGGCTGATGGAGGATGTGCTGACTCAGAAGCTGTCATGGGACTTGAT
Seq A exon
CTACCTTGGCCGGAAGCAGGTGAACCCTGAGGAGGAGGTGGCTGTGGAGGGGCTGCCTGGTCTCGTGGTGGCCGGGTACTCTTACTGGACACTCGCATACACCTTAAGCCTGGCGGGCGCTCGCAAACTGTTGGCCTCTCAGCCTCTGCACAGAATGCTACCAGTGGATGAGTTCCTGCCTGTCATGTTTGATCGTCACCCAAA
Seq C2 exon
TGACCAGTACAAAGCACACTTCTGGCCTCGGGATCTCCAAGCCTTCTCAGCCAGGCCTCTGCTTGCTTCTCCCACCCACTATGCGGGAGACACCGAGTGGCTCAGTGACACGGAGACATCCTCCCCTTGGGATGACGACAGTGGCCGCCTCATTAGCTGGACTGGCTCTCAAAAGACCCTTCGTGGCCCCTACCTGCACCTGGCTGGCAGCAGTGGACATAGCCTCCACCCTCACCCTAGGGATGAACTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604-'19-19,'19-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGCTTTGAGGACAACTT
R:
CTATGTCCACTGCTGCCAGC
Band lengths:
306-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]