BtaEX6046423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99058492-99063452:+
Coord C1 exon
chr11:99058492-99058623
Coord A exon
chr11:99062262-99062333
Coord C2 exon
chr11:99063381-99063452
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCCCGCCTTCCCTTAAAGGAT
3' ss Score
10.99
5' ss Seq
GCGGTAACA
5' ss Score
5.38
Exon sequences
Seq C1 exon
GAGAAACAGATGACCTGCTCGGACATCAACACCCTAACGAGGCAGAAAGAACTTCTCCTGCAGAAGCTGAGCACATTTGAAGAGACCAACCGCACTCTCCGAGACCTGCTGAGGGAACAACACTGCAAAGAG
Seq A exon
GATTCTGAAAGATTGATGGAGCAACAAGGGACACTGCTGAAACGGCTGGCAGAGGCGGACTCTGAGAAAGCG
Seq C2 exon
CGCCTGCTATTACTGCTGCAAGACAAAGACAAGGAGGTGGAAGATCTCCTCCAGGAAATACAATGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(52.5=72.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAACAGATGACCTGCTCGG
R:
TCCTTGTCTTTGTCTTGCAGCA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]