MmuEX1019110 @ mm10
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29903976-29914302:+
Coord C1 exon
chr2:29903976-29904107
Coord A exon
chr2:29912569-29912640
Coord C2 exon
chr2:29914231-29914302
Length
72 bp
Sequences
Splice sites
3' ss Seq
TAATTCTAACCATGCTGAAGGAT
3' ss Score
0.16
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGAAACAGATGACTTGCACCGACATCAACACCTTAACAAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGTACCTTTGAGGAGACCAATCGCACCCTCCGAGATCTGTTGAGGGAACAGCACTGCAAAGAG
Seq A exon
GATTCCGAGAGACTAATGGAGCAACAAGGTACATTACTGAAGCGTCTGGCAGAGGCAGACTCAGAGAAAGCG
Seq C2 exon
CGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAGGTGGAAGAACTCCTCCAGGAGATACAATGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(51.6=72.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATGACTTGCACCGACA
R:
TCCACCTCCTTGTCCTTGTCT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types