HsaEX6063247 @ hg19
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131235889-131245166:+
Coord C1 exon
chr9:131235889-131236020
Coord A exon
chr9:131243859-131243930
Coord C2 exon
chr9:131245095-131245166
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCTTTCTTTGAAGGAT
3' ss Score
10.33
5' ss Seq
GCGGTAACT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GAGAAACAAATGACCTGCACGGACATCAACACCCTGACAAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACATTTGAGGAGACCAACCGCACCCTCCGAGACCTCCTGAGGGAACAGCACTGCAAAGAG
Seq A exon
GATTCTGAAAGACTAATGGAGCAACAAGGAGCACTGCTGAAACGGCTGGCGGAGGCCGACTCAGAGAAAGCG
Seq C2 exon
CGCCTGCTGTTACTGCTGCAAGACAAGGACAAGGAGGTGGAAGAGCTCCTTCAGGAAATACAATGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'20-20,'20-18,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF108053=DUF2730=PD(34.8=72.7),PF123293=TMF_DNA_bd=PD(53.4=93.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTGCACGGACATCAAC
R:
GCTCTTCCACCTCCTTGTCCT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)