HsaEX6063247 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128473610-128482887:+
Coord C1 exon
chr9:128473610-128473741
Coord A exon
chr9:128481580-128481651
Coord C2 exon
chr9:128482816-128482887
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCTTTCTTTGAAGGAT
3' ss Score
10.33
5' ss Seq
GCGGTAACT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GAGAAACAAATGACCTGCACGGACATCAACACCCTGACAAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACATTTGAGGAGACCAACCGCACCCTCCGAGACCTCCTGAGGGAACAGCACTGCAAAGAG
Seq A exon
GATTCTGAAAGACTAATGGAGCAACAAGGAGCACTGCTGAAACGGCTGGCGGAGGCCGACTCAGAGAAAGCG
Seq C2 exon
CGCCTGCTGTTACTGCTGCAAGACAAGGACAAGGAGGTGGAAGAGCTCCTTCAGGAAATACAATGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'35-37,'35-33,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.275 C2=0.000
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(51.6=72.7)
A:
NO
C2:
PF123253=TMF_TATA_bd=PU(1.9=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTGCACGGACATCAAC
R:
GCTCTTCCACCTCCTTGTCCT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains