RnoEX6016225 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8467240-8475895:+
Coord C1 exon
chr3:8467240-8467371
Coord A exon
chr3:8474427-8474498
Coord C2 exon
chr3:8475824-8475895
Length
72 bp
Sequences
Splice sites
3' ss Seq
TAATTTCAACCCTACTGAAGGAT
3' ss Score
2.81
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGAAACAGATGACTTGCACCGACATCAACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAG
Seq A exon
GATTCCGAGAGACTAATGGAGCAACAAGGTGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCG
Seq C2 exon
CGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-'35-30,'35-29,38-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(51.6=72.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACCGACATCAACACCT
R:
GGAGTTCTTCCACTTCCTTGTCC
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]