GgaEX6015067 @ galGal4
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5117767-5119462:+
Coord C1 exon
chr17:5117767-5117898
Coord A exon
chr17:5118373-5118447
Coord C2 exon
chr17:5119391-5119462
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCACATATTTATTTTGCAGAGG
3' ss Score
8.88
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GAGAAACACATGAGCAGCTCAGACATTAACATGCTGACAAGACAGAAGGAGCTGCTGCTACAGAAACTGAGCACTTTTGAAGAAACCAATCGTACACTCCGGGAACTTCTCAGAGAACAGCACGAAAGGGAG
Seq A exon
AGGGATGTTCAGAAGATACTGGAGAAGCAGGGTGTGCTGATGAAAATGTTGGCTGACTCAGATGCAGAGAAGTTG
Seq C2 exon
CAACTTCAGATGAGGCTTCAGGATAAAGAAAAAGAGATCAACAATCTTGCTGTTCAGATACAGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-'22-13,'22-11,23-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.240 C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACAAGACAGAAGGAGC
R:
TCTTCCTGTATCTGAACAGCAAGA
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]