BtaEX6046602 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99534824-99536476:+
Coord C1 exon
chr11:99534824-99534936
Coord A exon
chr11:99535844-99535961
Coord C2 exon
chr11:99536340-99536476
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTGCTTGGCTCCCAGATG
3' ss Score
8.51
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCTACTCCAACCGGAGGGTCCAGAGCCCCAGTAGCAAGAGCAACGACACCCTGAGCGGCATCTCCTCCATTGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq A exon
ATGGTGGTGGTGAACTCATCCAGCCCCACGGCTGCGTGCTCGGGACCGTGGGAGACCAGAGGGATAGAGGAGTCTGTGACCACCGCCGACGGCAACGCTGAGAGCCTCTACATGCAAG
Seq C2 exon
GCATGGAGCTGTTCGAGGAGGCCCTGCAGAAATGGGAGCAGGCGCTGAGTGTGGGGCAGAGGGGGGACAGCGGCAGCACCCCCACTCCAGGGGACGGCCTCCGGAACCCTGAGACAGCTTCAGAGGCGCTGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.696
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(6.9=100)
A:
PF102654=DUF2217=FE(7.2=100)
C2:
PF102654=DUF2217=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCAGAGCCCCAGTAG
R:
CTCGGACAGCGCCTCTGAAG
Band lengths:
235-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]