HsaEX0024629 @ hg19
Exon Skipping
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131810706-131812242:+
Coord C1 exon
chr9:131810706-131810818
Coord A exon
chr9:131811660-131811777
Coord C2 exon
chr9:131812106-131812242
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGCACTGATTGGCGCCCAGATG
3' ss Score
3.94
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GATACTCCAGCCGGAGAGTCCAGAGCCCCAGCAGCAAGAGCAACGACACCCTGAGTGGCATCTCTTCCATTGAGCCCAGCAAGCACTCGGGCTCCTCCCACAGTGTGGCCTCG
Seq A exon
ATGATGGCAGTGAACTCATCCAGCCCCACAGCCGCGTGCTCGGGACTATGGGATGCCAGAGGGATGGAGGAGTCTCTGACCACCAGCGACGGCAATGCAGAGAGCCTGTACATGCAAG
Seq C2 exon
GCATGGAGCTGTTTGAGGAAGCTCTGCAGAAGTGGGAGCAGGCACTAAGCGTGGGCCAGCGGGGGGACAGCGGCAGCACCCCCATGCCCAGGGACGGCCTCCGGAACCCAGAGACTGCATCAGAGCCACTGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.728 C2=0.701
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(17.1=100)
A:
PF102654=DUF2217=FE(18.1=100)
C2:
PF102654=DUF2217=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCGGAGAGTCCAGAG
R:
CAGACAGTGGCTCTGATGCAG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)