MmuEX0018464 @ mm10
Exon Skipping
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30370295-30371669:+
Coord C1 exon
chr2:30370295-30370407
Coord A exon
chr2:30371115-30371232
Coord C2 exon
chr2:30371533-30371669
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTACTTGGTCCCTAGATG
3' ss Score
9.35
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
GCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq A exon
ATGGTAGTGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGTTCATGGGAAGCCCGAGGGATGGAGGAGTCTGTGCCCACCACTGATGGCAGTGCCGAGAGCCTCTATGTGCAAG
Seq C2 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.756 C2=0.696
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(32.7=94.7)
A:
PF102654=DUF2217=FE(10.7=100)
C2:
PF102654=DUF2217=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGGAGGGTTCAGAG
R:
TCTGACAGTGCTTCTGATGCG
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types