DreEX6082817 @ danRer10
Exon Skipping
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3700311-3703745:+
Coord C1 exon
chr21:3700311-3700426
Coord A exon
chr21:3702388-3702508
Coord C2 exon
chr21:3703624-3703745
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGGCTCCTCCCTCAGATG
3' ss Score
9.64
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
GTCCGGTTCCTGCTCGTCAGATGATGAGTCCCAGCACGCGCAGTAATGACACACTCAGCGGTGTTTCATCAATCGCACAAAGCAAACACTCGAGTTCTTCACACAGCATCGCCTCT
Seq A exon
ATGCGAGTCCCCTCCTCTCCTAACCAATCAGTGAATGCTGGGGCAGCATGGGAGGCGGAGCCTGTGGCTGAAGAGCCAGCAGTCGGAGAGGATGCCAATGCTGAAAACCTCTATCTCATGG
Seq C2 exon
GTATGGAGCTGTTTGAAGAAGCCTTGAGGAAGTGGGAGCTGGCTCTGAACATCAGGCACAGGTCTCACTCTCATGCTTCGGCCTCCAACAGTCAGGGTTCAGAGCTTGTGGAGCGACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.829 C2=0.463
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PU(6.8=96.9)
A:
PF102654=DUF2217=FE(8.8=100)
C2:
PF102654=DUF2217=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCCTGCTCGTCAGATGA
R:
CTCCACAAGCTCTGAACCCTG
Band lengths:
226-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]