MmuEX0018464 @ mm9
Exon Skipping
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30225815-30227189:+
Coord C1 exon
chr2:30225815-30225927
Coord A exon
chr2:30226635-30226752
Coord C2 exon
chr2:30227053-30227189
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTACTTGGTCCCTAGATG
3' ss Score
9.35
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
GCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq A exon
ATGGTAGTGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGTTCATGGGAAGCCCGAGGGATGGAGGAGTCTGTGCCCACCACTGATGGCAGTGCCGAGAGCCTCTATGTGCAAG
Seq C2 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.708 C2=0.659
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(32.7=94.7)
A:
PF102654=DUF2217=FE(10.7=100)
C2:
PF102654=DUF2217=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGGAGGGTTCAGAG
R:
TCTGACAGTGCTTCTGATGCG
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: