RnoEX0054546 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8936256-8937527:+
Coord C1 exon
chr3:8936256-8936368
Coord A exon
chr3:8936985-8937102
Coord C2 exon
chr3:8937391-8937527
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTACTTGGTCCCTAGATG
3' ss Score
9.35
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
GCTGCTCCAGCCGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTGAGTGGTATCTCCTCCATAGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq A exon
ATGGTAATGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGCTCATGGGAAACCAGAGGGATGGAGGAGTCTGTGCCCACCATGGATGGCAGTGCTGAGAGCCTCTATGTGCAAG
Seq C2 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGTCAGAGAGGGGACGGAGGCAGCACCCCCACACCAGGTGACAGCCTCCAGAACCCAGACACCTCATCTGAAGCACTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-'13-8,'13-5,15-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.825 C2=0.696
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.2=100)
A:
PF102654=DUF2217=FE(10.8=100)
C2:
PF102654=DUF2217=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGTTCAGAGCCCCAG
R:
GACAGTGCTTCAGATGAGGTGT
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]