GgaEX0027596 @ galGal4
Exon Skipping
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5460774-5466545:+
Coord C1 exon
chr17:5460774-5460984
Coord A exon
chr17:5464478-5464595
Coord C2 exon
chr17:5466428-5466545
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAATTCTGTGATTCCTGCAGATG
3' ss Score
8.94
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TCTGTCTTCTCTCAGCTGCGGCTCTCTGCAGGCCTACGTAAGGTACTGTTTGCTACAGCTCTTGGGACGGTTGCGTTGGCTCTTGCAGCTCATCAGCTGAAGCGTCGTCGTCGCCGAAAGAAGCAGATTGCTCCAGAGAAGTGTGGCTTTAAGCCTGGAGGCGTCACAGTGCCCATCCTGCCAACCAGAAGGGTCTCTTCTGTGAAGAAAG
Seq A exon
ATGGTAGCTGTGAACTCTTCAAGTCCAACACCAGCATCGGCCGGGATGTGGGAGGCCCAGGCAATGGGAGATGGTGGAGCCATCGGTGATTCCAGTGCAGAAAGCCTCTATGTTCAAG
Seq C2 exon
GAGGAGTCCCACAAAAGAGAGTTTGCTGAGAAGTTGGAGTCCCTCTTGCACCGAGCCTACCACCTCCAGGAGGAGTTTGGGTCTTCACTTCCATCAGACAGCATGCTGCTGGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.750 C2=0.200
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
PF102654=DUF2217=FE(7.2=100)
C2:
PF102654=DUF2217=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCTCTTGGGACGGTTG
R:
AAGACCCAAACTCCTCCTGGA
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]