BtaEX6046623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001933 | PPP2R4
Description
Bos taurus protein phosphatase 2A activator, regulatory subunit 4 (PPP2R4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046173]
Coordinates
chr11:99598053-99606880:+
Coord C1 exon
chr11:99598053-99598150
Coord A exon
chr11:99601632-99601718
Coord C2 exon
chr11:99606755-99606880
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCTCTGTTTGGCAGGCG
3' ss Score
9.09
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTCTTCAGAGGATGCCCCTCCCACCACTCAGAACTTCATCATTCCAAAGAAAGAGATCCACACTGTTCCAGATATGGGCAAATGGAAGCGTTCTCAG
Seq A exon
GCGTACGCTGACTACATCGGATTCATCCTCACCCTCAACGAAGGTGTGAAGGGGAAGAAGCTGAGCTTTGAGTACAAGGTCTCCGAG
Seq C2 exon
GCCATTGAGAAACTGGTCGCTCTTCTCAACACGCTGGACAGGTGGATCGATGAGACCCCTCCAGTGGACCAGCCCTCTAGATTTGGGAACAAGGCCTACAGGACCTGGTATGCCAAACTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001933-'11-4,'11-3,14-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(6.0=54.5)
A:
PF0309510=PTPA=FE(9.4=100)
C2:
PF0309510=PTPA=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCACCACTCAGAACTT
R:
TCCCAAATCTAGAGGGCTGGT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]