MmuEX6100290 @ mm10
Exon Skipping
Gene
ENSMUSG00000039515 | Ptpa
Description
protein phosphatase 2 protein activator [Source:MGI Symbol;Acc:MGI:1346006]
Coordinates
chr2:30426399-30432086:+
Coord C1 exon
chr2:30426399-30426496
Coord A exon
chr2:30428316-30428402
Coord C2 exon
chr2:30431961-30432086
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCTGGTTTTGCTAGGCA
3' ss Score
6.56
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTCTTCAGAAGAGACCCCTCCAACTACTCAGAACTTTATCATTCCAAAAAAGGAGATCCACACAGTTCCAGATATGGGCAAATGGAAGCGCTCTCAG
Seq A exon
GCATATGCTGACTACATTGGCTTCATCCTTACCCTCAATGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGACTACAAAGTCTCTGAG
Seq C2 exon
GCCATCGAGAAGCTGGTGGCACTTCTTGATACGCTGGATAGGTGGATTGATGAAACCCCGCCAGTGGACCAGCCTTCCCGGTTTGGGAACAAAGCCTACAGAACCTGGTATGCCAAACTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039515_MULTIEX1-2/7=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(15.1=54.5)
A:
PF0309510=PTPA=FE(50.9=100),PF0309510=PTPA=PU(3.7=27.6)
C2:
PF0309510=PTPA=FE(13.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCCAACTACTCAGAACT
R:
TAGGCTTTGTTCCCAAACCGG
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types