MmuEX6100290 @ mm9
Exon Skipping
Gene
ENSMUSG00000039515 | Ppp2r4
Description
protein phosphatase 2A, regulatory subunit B (PR 53) [Source:MGI Symbol;Acc:MGI:1346006]
Coordinates
chr2:30281919-30287606:+
Coord C1 exon
chr2:30281919-30282016
Coord A exon
chr2:30283836-30283922
Coord C2 exon
chr2:30287481-30287606
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCTGGTTTTGCTAGGCA
3' ss Score
6.56
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTCTTCAGAAGAGACCCCTCCAACTACTCAGAACTTTATCATTCCAAAAAAGGAGATCCACACAGTTCCAGATATGGGCAAATGGAAGCGCTCTCAG
Seq A exon
GCATATGCTGACTACATTGGCTTCATCCTTACCCTCAATGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGACTACAAAGTCTCTGAG
Seq C2 exon
GCCATCGAGAAGCTGGTGGCACTTCTTGATACGCTGGATAGGTGGATTGATGAAACCCCGCCAGTGGACCAGCCTTCCCGGTTTGGGAACAAAGCCTACAGAACCTGGTATGCCAAACTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039515-'1-6,'1-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(32.7=54.5)
A:
PF0309510=PTPA=FE(50.9=100),PF0309510=PTPA=PU(3.7=27.6)
C2:
PF0309510=PTPA=FE(13.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCCAACTACTCAGAACT
R:
TAGGCTTTGTTCCCAAACCGG
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: