HsaEX0049707 @ hg19
Exon Skipping
Gene
ENSG00000119383 | PPP2R4
Description
protein phosphatase 2A activator, regulatory subunit 4 [Source:HGNC Symbol;Acc:9308]
Coordinates
chr9:131882792-131891389:+
Coord C1 exon
chr9:131882792-131882889
Coord A exon
chr9:131885331-131885417
Coord C2 exon
chr9:131891264-131891389
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCTCTGTTTGGTAGGCA
3' ss Score
7.72
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTCTTCAGAGGAGGCCCCTCCAGCCACTCAGAACTTCATCATTCCAAAAAAGGAGATCCACACAGTTCCAGACATGGGCAAATGGAAGCGTTCTCAG
Seq A exon
GCATACGCTGACTACATCGGATTCATCCTTACCCTCAACGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGAGTACAGAGTCTCCGAG
Seq C2 exon
GCCATTGAGAAACTAGTCGCTCTTCTCAACACGCTGGACAGGTGGATTGATGAGACTCCTCCAGTGGACCAGCCCTCTCGGTTTGGGAATAAGGCATACAGGACCTGGTATGCCAAACTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119383_MULTIEX1-3/7=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(34.0=54.5)
A:
PF0309510=PTPA=FE(52.8=100),PF0309510=PTPA=PU(3.7=27.6)
C2:
PF0309510=PTPA=FE(12.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCACTCAGAACTTC
R:
TGCCTTATTCCCAAACCGAGA
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)