GgaEX1045681 @ galGal3
Exon Skipping
Gene
ENSGALG00000013978 | Q5ZM56_CHICK
Description
NA
Coordinates
chr17:6067757-6074099:+
Coord C1 exon
chr17:6067757-6067857
Coord A exon
chr17:6069157-6069243
Coord C2 exon
chr17:6073974-6074099
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGGATGTGTTTGCAGGCA
3' ss Score
7.67
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCAATTCAGAGGAGATGGCTCCTCCCCTCCAGCAGAGCTTCATGATCCCCAGAAAGGAGATAAACATGGTTTCTGACATGGGCAAGTGGAAGCGCTCTCAG
Seq A exon
GCATATGCAGATTACATGGGCTTCATCCTCACCCTGAACGAAGGTGTCAAGGGCAGGAAACTGACCTGTGAATACAACGTTTCAGAG
Seq C2 exon
CCAATAGAAAAGCTGGTGGCTCTTCTGAACACCCTTGACAGATGGATCGATGAAACCCCACCAGTGGATCAACCTTCTCGCTTTGGGAACAAAGCCTTCAGGACTTGGTATGCCAAACTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013978-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(6.0=52.9)
A:
PF0309510=PTPA=FE(9.4=100)
C2:
PF0309510=PTPA=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCTTCATGATCCCCAG
R:
GTCCTGAAGGCTTTGTTCCCA
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]