RnoEX0071105 @ rn6
Exon Skipping
Gene
ENSRNOG00000018457 | Ptpa
Description
protein phosphatase 2 phosphatase activator [Source:RGD Symbol;Acc:1308354]
Coordinates
chr3:8990956-8997773:+
Coord C1 exon
chr3:8990956-8991053
Coord A exon
chr3:8992990-8993076
Coord C2 exon
chr3:8997648-8997773
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTGTTTGTTCTAGGCA
3' ss Score
11.33
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTCTTCAGAAGAGACCCCTTCAGCTACTCCGACCTTCATCATTCCAAAAAAGGAGATCCACACAGTCCCAGATATGGGCAAATGGAAGCGCTCTCAG
Seq A exon
GCATATGCTGACTACATCGGCTTTATCCTAACCCTGAATGAAGGTGTGAAAGGGAAGAAGCTAACCTTCGACTACAAAGTCTCTGAG
Seq C2 exon
GCCATTGAGAAGCTGGTGGCACTTCTTGATACGCTGGATAGGTGGATTGATGAAACCCCGCCAGTGGACCAGCCTTCCCGATTTGGGAACAAAGCCTACAGGACCTGGTATGCCAAACTCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018457-'7-5,'7-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(6.0=54.5)
A:
PF0309510=PTPA=FE(11.3=100)
C2:
PF0309510=PTPA=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGCTACTCCGACCTT
R:
CAAATCGGGAAGGCTGGTCC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]