DreEX6011755 @ danRer10
Exon Skipping
Gene
ENSDARG00000031985 | ppp2r4
Description
protein phosphatase 2A activator, regulatory subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040801-11]
Coordinates
chr5:32208727-32212002:-
Coord C1 exon
chr5:32211893-32212002
Coord A exon
chr5:32209218-32209304
Coord C2 exon
chr5:32208727-32208852
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTGCAAGTAGGCA
3' ss Score
5.32
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCTCCTCCCATGAGGATGACAAACCTCCCAGTTCTGTCGGTTTCAACTTCATGGTGCCAAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAAAGATCACAG
Seq A exon
GCATATGCAGACTACATTGGATTCATTCTGACCCTGAATGAGGGAGTAAAGGGAAAGAAGCTTACATGTGAATACCAGGTGTCTGAG
Seq C2 exon
ACAGTGGAGAAGTTGCTTGCTTTGTTGGGAACATTAGATCAGTGGATCGATGAGACTCCACCAGTAGACCAGCCTTCTCGCTTCGGCAATAAAGCTTTCCGAACATGGTATGCCAAACTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031985-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0309510=PTPA=PU(14.9=48.6)
A:
PF0309510=PTPA=FE(23.1=100)
C2:
PF0309510=PTPA=FE(33.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTCCCAGTTCTGTCGG
R:
AAGCGAGAAGGCTGGTCTACT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]