BtaEX6046909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101592546-101595952:+
Coord C1 exon
chr11:101592546-101592660
Coord A exon
chr11:101593645-101593822
Coord C2 exon
chr11:101595850-101595952
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTCCATCCCTCCCCCCGCAGTTA
3' ss Score
10.57
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATGTCCGATCGTTTGGGGCAAATAACCAAGGGCAAGGATGGGAAAAGCAAGTATTCGACTCTCAGCCTGTTTGACAAGTATAAAGGAAAATCAGTAGATTCAGTCAGATCCTCAG
Seq A exon
TTATTCCTCGACATGGCTTACAAAGTCTTGGGAAAGTTGCCACGGCCCGGCGCATGCCACCACCTGCAAACCTGCCAAGCCTGAAGTCTGAAAACAAAGGAAACGACCCCAACATCGTGATAGTACCCAAGGACGGAACAGGATGGGCAAACAAGCAGGACCAGCAAGACCCAAAGAG
Seq C2 exon
TTCCAGTGTGACGGCCTCTCAGCCGCCGGAGTTGCTGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAGCCGACACAGTCGATCAGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(19.6=97.4)
A:
PF070016=BAT2_N=FE(30.4=100)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGATCGTTTGGGGCAA
R:
CTCCTGACTGATCGACTGTGT
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]