GgaEX1046423 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6185875-6187432:+
Coord C1 exon
chr17:6185875-6185989
Coord A exon
chr17:6186937-6187114
Coord C2 exon
chr17:6187330-6187432
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCCTTTCTCACTAGTTA
3' ss Score
8
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
ATGTCCGATCGTTTGGGGCAAATAACCAAGGGAAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGATAAGTATAAAGGAAAGTCAATAGAAGCTATCAGAACTACAG
Seq A exon
TTATTCCTAGACATGGCTTACAGAGTCTTGGAAAAGTTGCTGCTGCTCGGCGCATGCCACCTCCTGCAAACTTGCCTAGCTTGAAGTCTGAGAACAAAGGAAACGACCCCAACATCGTTATAGTACCCAAAGACGGTACAGGATGGGCAAACAAGCAGGATCAATCAGACCAAAAGAA
Seq C2 exon
TTCCAGTGCGACAGCTGCACAGCTGCAGGAGTCGCTGCTGCAGCAGGGTTTGCAGAAATCTGTCTCCAATTTACAGAAGCCGACACAGTCAATCGCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=0.908 C2=0.905
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(19.6=97.4)
A:
PF070016=BAT2_N=FE(30.4=100)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGATCGTTTGGGGCAA
R:
CTCCTGAGCGATTGACTGTGT
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]