MmuEX7010780 @ mm10
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32182458-32185447:+
Coord C1 exon
chr2:32182458-32182626
Coord A exon
chr2:32183123-32183300
Coord C2 exon
chr2:32185345-32185447
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCATGTTCTTTTCCTTGCAGTTA
3' ss Score
10.06
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCAAATCGGGAGCGGTGCCGAGAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTTGGGGCAAATAACCCAGGGCAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGACAAGTATAAAGGGAGGTCAGTAGGCGCTGTCAGGTCCTCAG
Seq A exon
TTATTCCTAGACATGGCTTACAGAGTCTCGGGAAAGTTGCCACAGCCCGGCGTATGCCACCGCCTGCAAACCTGCCAAGCCTGAAGTCTGAAAACAAAGGAAACGACCCCAACATCGTGATAGTTCCCAAGGACGGGACAGGATGGGCCAACAAGCAGGACCAGCAAGACCCAAAGAG
Seq C2 exon
TTCCAGTGTGACGGCCTCTCAGCCGCCGGAGTCGCAGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAACCGACACAGTCTATCAGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'40-12,'40-2,42-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(19.6=97.4)
A:
PF070016=BAT2_N=FE(30.4=100)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
ENSMUST00000069817fB15247
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGTGCCGAGAAAATTTC
R:
AGACTGTGTCGGTTTCTGCAA
Band lengths:
251-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types