RnoEX6016418 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11198401-11201551:+
Coord C1 exon
chr3:11198401-11198515
Coord A exon
chr3:11199033-11199210
Coord C2 exon
chr3:11201449-11201551
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCATGTTCTTTTCCTTGCAGTTA
3' ss Score
10.06
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGTCCGATCGTTTGGGGCAAATAACCCAGGGCAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGACAAGTATAAAGGGAGGTCAGTAGGCGCAGTCAGATCCTCAG
Seq A exon
TTATTCCTAGACATGGCTTACAGAGTCTCGGGAAAGTTGCCACAGCCCGGCGTATGCCACCGCCTGCAAACCTGCCAAGCCTGAAGTCTGAAAACAAAGGAAACGACCCCAACATCGTGATAGTTCCCAAGGACGGGACAGGATGGGCCAACAAGCAGGACCAGCAAGACCCAAAGAG
Seq C2 exon
TTCCAGTGTGACAGCCTCTCAGCTGCCGGAGTCGCAGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAACTTGCAGAAACCGACACAGTCTATCAGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-'4-6,'4-2,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(19.6=97.4)
A:
PF070016=BAT2_N=FE(30.4=100)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGATCGTTTGGGGCAA
R:
CTCCTGACTGATAGACTGTGTCG
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]