HsaEX6063594 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134305477-134312109:+
Coord C1 exon
chr9:134305477-134305646
Coord A exon
chr9:134308004-134308181
Coord C2 exon
chr9:134312007-134312109
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCATGTCCCTCTCCCTGCAGTTA
3' ss Score
10.76
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCAGATCGGGAGCGGTGCCGAGAAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTTGGGGCAAATTACCAAGGGCAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGATAAGTATAAAGGAAAATCAGTAGACGCGATTAGATCCTCAG
Seq A exon
TTATTCCTAGACATGGCTTACAGAGTCTTGGGAAAGTTGCTGCAGCCCGGCGCATGCCACCGCCTGCAAACCTGCCAAGCTTGAAGTCTGAAAACAAAGGAAACGACCCCAACATCGTGATAGTACCCAAGGACGGGACGGGATGGGCAAACAAGCAGGATCAGCAAGACCCAAAGAG
Seq C2 exon
TTCCAGTGCGACGGCCTCTCAGCCGCCGGAGTCGCTGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAACCGACACAGTCAATCAGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(27.9=97.4),PF130101=pRN1_helical=PU(65.3=82.1)
A:
PF070016=BAT2_N=FE(43.4=100),PF130101=pRN1_helical=PD(32.7=26.7)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGCCGAGAAAAATTTCC
R:
TGACTGTGTCGGTTTCTGCAA
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)