GgaEX1046423 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6812530-6814087:+
Coord C1 exon
chr17:6812530-6812644
Coord A exon
chr17:6813592-6813769
Coord C2 exon
chr17:6813985-6814087
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCCTTTCTCACTAGTTA
3' ss Score
8
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
ATGTCCGATCGTTTGGGGCAAATAACCAAGGGAAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGATAAGTATAAAGGAAAGTCAATAGAAGCTATCAGAACTACAG
Seq A exon
TTATTCCTAGACATGGCTTACAGAGTCTTGGAAAAGTTGCTGCTGCTCGGCGCATGCCACCTCCTGCAAACTTGCCTAGCTTGAAGTCTGAGAACAAAGGAAACGACCCCAACATCGTTATAGTACCCAAAGACGGTACAGGATGGGCAAACAAGCAGGATCAATCAGACCAAAAGAA
Seq C2 exon
TTCCAGTGCGACAGCTGCACAGCTGCAGGAGTCGCTGCTGCAGCAGGGTTTGCAGAAATCTGTCTCCAATTTACAGAAGCCGACACAGTCAATCGCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.904 C2=0.857
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(27.9=97.4),PF130101=pRN1_helical=PU(65.3=82.1)
A:
PF070016=BAT2_N=FE(43.4=100),PF130101=pRN1_helical=PD(32.7=26.7)
C2:
PF070016=BAT2_N=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGATCGTTTGGGGCAA
R:
CTCCTGAGCGATTGACTGTGT
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]