DreEX0007109 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71269578-71274138:-
Coord C1 exon
chr5:71273962-71274138
Coord A exon
chr5:71271481-71271658
Coord C2 exon
chr5:71269578-71269680
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTCTCGTCCTGCAGTTG
3' ss Score
11.19
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
TCTGACGGTACTGAGGAAGAGGTGCAAAGAAAAATTTCCATACTCGATGACATTACATCGCAATGTCCGATCGTTTGGGGCAAATTACCAAGTCCAAGGATGGGAAAAGCAAGTATTCATCACTCAGCCTATTTGACAAGTACAAGGGGAAGTCAATAGAAACTCAGAAAACCACAG
Seq A exon
TTGTTGCACGTCATGGCTTACAGAGTCTTGGTAAAGTGGCCGCAGCCCGGCGAATGCCTCCTCCCGCTCACCTGCCGAGTCTGAAGTCTGAGAGTAAAGGAAACGATCCCAACGTGATTATCGTGCCCAAAGACGGTACAGGATGGGCAAACAAGCAGGATCAACCCGATCCAAAGAG
Seq C2 exon
TTCCGTTGCATCATCAGCACAGCTGCCGGAGCCGCAGCCGCCGCTGGCTTTACAGAAATCTGTGTCCAATCTTCAGAAGCCCATGCCAATAACCAGCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(19.9=97.4)
A:
PF070016=BAT2_N=FE(30.9=100)
C2:
PF070016=BAT2_N=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACTGAGGAAGAGGTGCA
R:
GCATGGGCTTCTGAAGATTGGA
Band lengths:
258-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]