BtaEX6046912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101663103-101664622:+
Coord C1 exon
chr11:101663103-101663200
Coord A exon
chr11:101663717-101663830
Coord C2 exon
chr11:101664496-101664622
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGGCCTCTGTGGTCTGCAGTGG
3' ss Score
5.6
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GCCAGGAGCAGAAGGAGAGGGAGCTGGAGCTGCACTCCCCCACCCAGGTGGACATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCCGAGCTTCAG
Seq A exon
TGGCGGATGCTGACGGTGAGAAGTGACGATTCGGAACACAAGTACAGCTCCACGCCGCTGGACTGGGTCATGCTGGACACCAACATCGCTTACTGGCTGCACCCCAGGACCAGT
Seq C2 exon
GCGCAGATCCACCTGCTTGGGAACGTCGTGATCTGGGCCTCCGCCAGCCTTGCCACCCTGGTGTACGCCCTGCTGTTCATCTGGTACCTGCTCAGACGCAGAAGGAGAGTCTGCGACCTCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805-'28-29,'28-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCAGAAGGAGAGGGAG
R:
CTTCAGGGAGGTCGCAGA
Band lengths:
223-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]