RnoEX0068252 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11268029-11269715:+
Coord C1 exon
chr3:11268029-11268126
Coord A exon
chr3:11268625-11268738
Coord C2 exon
chr3:11269589-11269715
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTATTCTGTGGCAGTGG
3' ss Score
6.56
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GCCATGAGCAGAAGGAGAGGGAGCTGGAGCTCCACTCACCCACGCAGCATGATATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCGGAGTTACAG
Seq A exon
TGGAAGATGCTGACGCTGAAGAATGAGGACTTAGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATTGCCTATTGGCTGCACCCCAGGACCAGT
Seq C2 exon
GCCCAGATCCACTTGCTTGGAAACATCGTGATCTGGACTTCAGCCAGCCTCGCCACAGTGGCATACACCCTACTCTTCTTCTGGTACCTGCTCCGCCGTCGAAGGAACATCTGTGACCTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'23-30,'23-27,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGCAGAAGGAGAGGGA
R:
CCTCAGGGAGGTCACAGATGT
Band lengths:
224-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]