GgaEX1045222 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6231492-6232802:+
Coord C1 exon
chr17:6231492-6231589
Coord A exon
chr17:6232093-6232206
Coord C2 exon
chr17:6232676-6232802
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGTTTACTTTTTTTTCCAGTGG
3' ss Score
9.24
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq A exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
Seq C2 exon
GCTCAGATCCATCTCCTTGGGAATGTTTGCACCTGGGCTTCAGCTAACATCGCTGCTGTGGTCTACACGTGTCTGTCCCTGTGGTACTTGATACGACGAAGAAGAAAAATCTATGATATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'25-27,'25-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAGCAAAAAGAGAGGGA
R:
AGATTTTTCTTCTTCGTCGTATCAA
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]