DreEX6013217 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50478119-50479138:+
Coord C1 exon
chr5:50478119-50478216
Coord A exon
chr5:50478813-50478926
Coord C2 exon
chr5:50479012-50479138
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTAATGTGTTTGATTACCAGTGG
3' ss Score
5.37
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTCAGGAACCAAAGGAAAGGGAGTTGGAGCTGAAGTCTCCTACTCACAGCGATGTCAACAAAAATCTCACATTTATGGCCAAATTTCTGGAACTGCAG
Seq A exon
TGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAAT
Seq C2 exon
GCACAGATTCACTTTATAGGCAATATTGTTACTTGGACCACTGGAAACATTACACTGGTTGTGTACTGTCTTCTGTTTTTAACATACTTACTAAGACGGAGGAGGAAAGTTGAAGACATTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'19-21,'19-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAACCAAAGGAAAGGGA
R:
AATGTCTTCAACTTTCCTCCTCCG
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]