GgaEX1045222 @ galGal3
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6859028-6860338:+
Coord C1 exon
chr17:6859028-6859125
Coord A exon
chr17:6859629-6859742
Coord C2 exon
chr17:6860212-6860338
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGTTTACTTTTTTTTCCAGTGG
3' ss Score
9.24
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq A exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
Seq C2 exon
GCTCAGATCCATCTCCTTGGGAATGTTTGCACCTGGGCTTCAGCTAACATCGCTGCTGTGGTCTACACGTGTCTGTCCCTGTGGTACTTGATACGACGAAGAAGAAAAATCTATGATATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAGCAAAAAGAGAGGGA
R:
AGATTTTTCTTCTTCGTCGTATCAA
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]