MmuEX6100504 @ mm9
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32106782-32108522:+
Coord C1 exon
chr2:32106782-32106879
Coord A exon
chr2:32107430-32107543
Coord C2 exon
chr2:32108396-32108522
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTATCCTGTGGCAGTGG
3' ss Score
5.64
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCCATGAGCAGAAGGAGAGGGAGCTGGAGCTCCACTCGCCCACTCAGCTCGATATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCAGAGTTACAG
Seq A exon
TGGAAGATGCTGACGCTGAAGAATGAGGACTTGGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATCGCCTATTGGCTACATCCCAGGACCAGT
Seq C2 exon
GCTCAGATCCACTTGCTTGGGAACATTGTGATCTGGACTTCAGCCAGCCTTGCCACAGTGGTCTACACTCTACTCTTCTTCTGGTACCTGCTCCGCCGGCGAAGGAGCATCTGTGACCTCCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254-'24-28,'24-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGCAGAAGGAGAGGGA
R:
TCAGGGAGGTCACAGATGCTC
Band lengths:
222-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: