BtaEX6047025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021373 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr11:103096359-103098809:+
Coord C1 exon
chr11:103096359-103096441
Coord A exon
chr11:103097261-103097403
Coord C2 exon
chr11:103098207-103098809
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTCTCCGACACCCAGGCT
3' ss Score
5.15
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GACTCGGTGTACATCTTCCAGGAGGGGGCCCTGCCGCCATACCGACAGATGTTCTACCAGTTCTGTGACCTGAACGTGGAGGA
Seq A exon
GCTGCAGAGAGTCATTCACCGCAACGACGGGGCGGAGAGCTCCTGCACCGAGCGCGATGGCTGGTGCCTCCCCAAGACCACAGACGAGCTGAGGGACACCATGTCCCTCATGATCCGGCAGACCATCCGCTCCAAGAGGCCTG
Seq C2 exon
CTCTCTTCTCCAGCCCGACCAAAGCGGACAGTGGGAAAGAGCAGCTGACCGGCGAGTCCGGGGAAGATGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGTTCAAGCCGTCCGATGGGAGCGAGAACGAGATGGAGACGGAGATCCTGGACTACGTGTAATGCAGCCCTGGGCCCTCAGCCAGGCCCCCAGCCCAGGCCCCTGCCCAGGCCCGATGAGGGGTCCAGGACACGCCAGGGACCCCAGCGCCATCTGCAGCAGCCAGCACAGCCCTAGGCGGCCTGTCTGAGGAGAGCAGCTGGGTGCACTGCCCCTGGTCCCGCCCAGGCTGCCCCCTGGCTCCGGGTGCCTGTGCCCGGCCTCGCCAGCCCAGCGCCCTGCCCCGCCCCTGGCTGAGACCAGCGTGAGCTGGCGGTGGGGATGGTGCGGCCCGGGAGGGGCCGGCCTGGCTGGGGTCAGACTGGAGGTGAGGGCGGCGCGGGGACCCTGGTCCAGGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021373-'12-18,'12-17,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.510 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACATCTTCCAGGAGGGGG
R:
GGGCTGCATTACACGTAGTCC
Band lengths:
245-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]