DreEX6083353 @ danRer10
Exon Skipping
Gene
ENSDARG00000067979 | gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-060810-66]
Coordinates
chr21:11287874-11290480:+
Coord C1 exon
chr21:11287874-11287956
Coord A exon
chr21:11289992-11290134
Coord C2 exon
chr21:11290210-11290480
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTCCTTGTGTTCAGAAT
3' ss Score
8.9
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GAATCCATCTACATCTTTCGGGAAGGAATGCTTCCTCCATACCGACAGATGTTCTACCAGTTGTGTGATCTGGATGTAGAAAA
Seq A exon
AATACAGAATCTCATCCATAAGAATGATGGGAAAGAGGAAGTGTGTGATGAGAGAGATGGCTGGTGTGTTCCTCACACGGCCGATGAGCTCAGAAACATCATCTCAGGAATGATCCAACAATACGTCAAAGCCAACCGCCCTG
Seq C2 exon
GTCCATCCACACAGAAGCCTGTGAAAAGAAGAGCCAAAGATGTTGGCAGCGGAGAAGAGGATGATGAAGATGAAGATGACGATGATGATGAAGAGTACAAGCCCTCTGATGGGAGCGACAATGAAATGGAAACTGAGATTGCAGATTATATGTAGCGGCCCTTTAGTTTCATCTGTGGAACATATGCTTTATATATGTAAATGGTAGTGCAGTCAAATGATTAATCAAAATACATTAGTTCAAAATAAAATAAGTTCATATTTATAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067979-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.367 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTCGGGAAGGAATGCT
R:
CAGATGAAACTAAAGGGCCGCT
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]