HsaEX6063704 @ hg19
Exon Skipping
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:4668]
Coordinates
chr9:135931399-135933888:+
Coord C1 exon
chr9:135931399-135931481
Coord A exon
chr9:135932153-135932295
Coord C2 exon
chr9:135933201-135933888
Length
143 bp
Sequences
Splice sites
3' ss Seq
AACCCTCTCCCCACCCCCAGGTT
3' ss Score
10.57
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACTCTGTCTACATCTTCCGGGAAGGGGCCTTGCCACCCTATCGGCAGATGTTCTACCAGTTATGCGACTTGAATGTGGAAGA
Seq A exon
GTTGCAGAAGATCATTCACCGCAATGACGGGGCAGAGAATTCCTGCACAGAACGGGATGGGTGGTGCCTCCCCAAGACCAGCGACGAGCTCAGGGACACCATGTCCCTCATGATCCGGCAGACCATCCGCTCCAAGAGGCCTG
Seq C2 exon
CTCTCTTTTCCAGCTCAGCCAAGGCTGATGGCGGAAAAGAGCAGCTGACGTACGAGTCTGGGGAAGACGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGACAGAGATTCTGGACTACGTGTGACAGGGCCCAAGGCTGGGCCTCCCTGACCCGGCCAGACTGGTGTCTGGCCTAATGAGGGAGCCGGGGCTCCCCATTGCCACCCACAGTGCCCGGAATGGCCCTAGGAGGCCCTCTGAGGAGAGCTAGAGTCCCAGCAAAGGGTGCAGCTGACCCTAGCACTGGCTGTGACATGCTGCTTGGTGCTGCCTCTGGTCCTGAGGGGTTAGGGACATCCCCAAAGGGTATACCCTGGCTCTGCCACCCATGAACCAGCCCAGCATCCAGCCAGTGAGTGGGCACCCAATGCCTCTCAGGATGAGACCAGTAAATGCCGGAGGTGGAGCTGGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.337 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCTTCCGGGAAGGGG
R:
CCCTGTCACACGTAGTCCAGA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)