GgaEX0004505 @ galGal3
Exon Skipping
Gene
ENSGALG00000003441 | GTF3C5
Description
NA
Coordinates
chr17:7445365-7451572:+
Coord C1 exon
chr17:7445365-7445447
Coord A exon
chr17:7445734-7445876
Coord C2 exon
chr17:7446596-7451572
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTGCTTTTTAGCTT
3' ss Score
10.06
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAATCCGTCTATATTTTCCGGGAAGGAGCCTTGCCCCCTTATCGGCAGATGTTCTATCAACTCTGTGACTTGAATGTGGAAAG
Seq A exon
CTTACAAAAAATCATCCATCGGAATGATGGCACAGAGTCAGAATGCACGGAGCGGGATGGGTGGTGCCTTCCAAAGACTAGTGATGATCTGCGAGATAGCATGTCCCTGATGATAAAGCAGATAATCAGATCCACAAGACCTG
Seq C2 exon
CTCTTTTCTCAAGTACAACAAGCAGTGAAGATGGCAAAGAACAGCTGGCATATGAGTCTGGAGAGGATGAGGATGATGAAGAGGAGGAGGAAGAAGAATTCAAGCCTTCTGATGGGAGTGAAAATGAGATGGAAACAGAAATTCTAGACTACGTGTGAACTCAGTGAGTAGTCTCACTGCTGCTGGACAGAATCTTCTTGGCTCTTGTTCCTTCAGTGCTGATGGTTCAGCAACCATACACAGGGTGTGTGAGAGCAGAACTTGCACTAAGCTGCTCAATACCCGTCTGCACTGACTGTGGTGCCTGGTGAAGGCTGTCATTTTGGATGTTCAGACACCATGACCCACATGGCATCTGGATGAGGTGCTATGAGATATGGTTCAGTAGGTTGTGGTAGTAATGGTGATGGGAGGACAATTGGACTAGGTGATCTTGTAGGTCCTTTTCAACCTTGTGATTCTATGATTCTATCATCCTATTTTTATAACTGTTGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003441_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.265 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTTATCGGCAGATGTTC
R:
TTCTGTCCAGCAGCAGTGAGA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]