GgaEX0004505 @ galGal4
Exon Skipping
Gene
ENSGALG00000003441 | GTF3C5
Description
general transcription factor 3C polypeptide 5 [Source:RefSeq peptide;Acc:NP_001025855]
Coordinates
chr17:6785438-6787429:+
Coord C1 exon
chr17:6785438-6785520
Coord A exon
chr17:6785807-6785949
Coord C2 exon
chr17:6786669-6787429
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTGCTTTTTAGCTT
3' ss Score
10.06
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAATCCGTCTATATTTTCCGGGAAGGAGCCTTGCCCCCTTATCGGCAGATGTTCTATCAACTCTGTGACTTGAATGTGGAAAG
Seq A exon
CTTACAAAAAATCATCCATCGGAATGATGGCACAGAGTCAGAATGCACGGAGCGGGATGGGTGGTGCCTTCCAAAGACTAGTGATGATCTGCGAGATAGCATGTCCCTGATGATAAAGCAGATAATCAGATCCACAAGACCTG
Seq C2 exon
CTCTTTTCTCAAGTACAACAAGCAGTGAAGATGGCAAAGAACAGCTGGCATATGAGTCTGGAGAGGATGAGGATGATGAAGAGGAGGAGGAAGAAGAATTCAAGCCTTCTGATGGGAGTGAAAATGAGATGGAAACAGAAATTCTAGACTACGTGTGAACTCAGTGAGTAGTCTCACTGCTGCTGGACAGAATCTTCTTGGCTCTTGTTCCTTCAGTGCTGATGGTTCAGCAACCATACACAGGGTGTGTGAGAGCAGAACTTGCACTAAGCTGCTCAATACCCGTCTGCACTGACTGTGGTGCCTGGTGAAGGCTGTCATTTTGGATGTTCAGACACCATGACCCACATGGCATCTGGATGAGGTGCTATGAGATATGGTTCAGTAGGTTGTGGTAGTAATGGTGATGGGAGGACAATTGGACTAGGTGATCTTGTAGGTCCTTTTCAACCTTGTGATTCTATGATTCTATCATCCTATTTTTATAACTGTTGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003441_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTTATCGGCAGATGTTC
R:
TTCTGTCCAGCAGCAGTGAGA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]