MmuEX6100001 @ mm10
Exon Skipping
Gene
ENSMUSG00000026816 | Gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1917489]
Coordinates
chr2:28567608-28569374:-
Coord C1 exon
chr2:28569292-28569374
Coord A exon
chr2:28568485-28568627
Coord C2 exon
chr2:28567608-28567802
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCAGCTTCCTCTGCCCACAGGTT
3' ss Score
10.97
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GATTCGGTCTACATCTTCCGGGAAGGGGCTCTGCCACCCTATCGACAGATGTTCTACCAGCTGTGTGATTTGAATGTGGAGGA
Seq A exon
GTTGCAGAAAATTGTTCACCGAAACGATGGGACAGAGACTGTGTGCACAGAGAGAGATGGGTGGTGCCTCCCCAAGACCACAGATCACCTGAGAGACACCATGTCACTCATGATTCTACAGACCATCCGCTCTGAGAGGCCTG
Seq C2 exon
CTCTTTTCTCCAACACAGGTAAGGCTGATCGTGGGAAAGAGCAGCTGATGTTTGAATCTGGAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAGGATTTCAAGCCCTCAGATGGGAGCGAGAATGAGATGGAGACAGAGATTCTGGATTACGTGTGAGGAAGCGCTGTTCCCAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026816-'21-22,'21-20,23-22=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.378 C2=0.959
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCTTCCGGGAAGGGG
R:
CAGCGCTTCCTCACACGTAAT
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types