RnoEX0040559 @ rn6
Exon Skipping
Gene
ENSRNOG00000010981 | Gtf3c5
Description
general transcription factor IIIC subunit 5 [Source:RGD Symbol;Acc:1305173]
Coordinates
chr3:7145722-7147545:-
Coord C1 exon
chr3:7147463-7147545
Coord A exon
chr3:7146594-7146736
Coord C2 exon
chr3:7145722-7145901
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCAGCTTTCTCTGCCCACAGGTT
3' ss Score
10.05
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GATTCGGTCTACATCTTCCGGGAAGGGGCTCTGCCACCCTATCGACAGATGTTCTACCAGCTGTGTGATTTGAATGTGGAAGA
Seq A exon
GTTACAGAAAATTGTTCACCGCAATGATGGGACAGAGAGTGTATGCACAGAGAAAGATGGGTGGTGCCTCCCCAAGACCACAGACCACCTGAGAGACACTATGTCACTCATGATTCTACAGACCATCCGCTCTGAGAGGCCTG
Seq C2 exon
CTCTGTTCTCCAACACAGGTAAGGCTGATCATGGGAAAGAGCAGCTGATGTTTGAATCTGGAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGTTCAAGCCCTCAGATGGGAGTGAGAATGAGATGGAAACAGAGATTCTGGATTACGTGTGAGGAAGCACTGCTCCCGGGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010981-'14-13,'14-12,16-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCTTCCGGGAAGGGG
R:
GCAGTGCTTCCTCACACGTAA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]