BtaEX6047215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103946682-103947782:-
Coord C1 exon
chr11:103947669-103947782
Coord A exon
chr11:103947229-103947421
Coord C2 exon
chr11:103946682-103946912
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGAGGCTTTTCTCCCTCAGGAG
3' ss Score
8.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCGCCTCCCAGTTGCGCCTCTTTGACCCTCAGCTGAAGGAGAAGCCGGAGGAGGAGGCATCTGCAGAGCCTCCTTGGCTGGTCCAGCTGCAGCTCGTGGAGAGACAGGTCGAG
Seq A exon
GAGGGTGCTGTGGCCTGGAGTCAGGACGGAGCCTGCCCCCCACACTGCCCCAGCTCACCAAGCCCTGAGGTGGGGCCCCGTGACGGCCCAGAACCCACCCAGCTGGTGGGCCTGGGTGCCGACAACCCACTGCTGGCCCCGCCAGTGACCGGCGCCGAGCTCTTAAGCCAGGATGTGCGGCTGCTGCCCTCAG
Seq C2 exon
CTCCTCTGACGCTCCCCGATGGCCCAGCAGCCATTCCCGTCCGGGTGCCCATGTTCCCCGTGCCACTGCCAGGTCCTGTCGAGCTGGGGCCCGTACATGGTCCCCCAGGGGCTGTACCTGGCTTTCCAGAGCCCTCTGGGCCTGACCCTGTGGCCCTGTACCCCGGACCTGGGGTGCCACCTCTCCAGGAAACGGACCGCCTGCTCCCGGAGGCCAGGGGCCAGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'24-25,'24-23,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.831 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(11.8=81.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGCAGAGCCTCCTTG
R:
TCCGTTTCCTGGAGAGGTGG
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]