GgaEX1051395 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8553427-8554842:+
Coord C1 exon
chr17:8553427-8553540
Coord A exon
chr17:8554210-8554414
Coord C2 exon
chr17:8554594-8554842
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTGTACAGGAG
3' ss Score
8.3
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATGTCATCGCAGCTGCGCCTGTTTGATCCTCAGATAAAGGAGAAACCAGACCAGGAATCCTTCATTGAACCTTCATGGTTAGTAAGGCTTCGACATGTGGATGGACAGATCAAG
Seq A exon
GAGGGTGCAATTGCTTATAGCACAGACAGATCCACGCCACAGCAGTACCCATGTAGCACACCAAGCTCTGAATTAGACCATACCAGTCAATATGATGGAGCAGGAGTTGGCCACGACATGGTCCCAGGTGCTGAAAATGCATTGTTAGCATCCTTATTGCCCAATATGGCTCAACAGATGCAAAGCGTGCAGCTGATGCCTTCAG
Seq C2 exon
CTCCTCAGGCTATACTTGATGGGTCAACTGCTGGGATTCCACCTAGTGACCAGGAAGCTGTCCAAAGTGTCCCTTTCTATCCTGTGGCTCCTCAGCCTATTGGTCCAGGACCTGGCTTTGCACCTCCGGGGTTTTCAAATCAGTATGGAGCTGAGCCATCGCCGCTGTATTTGGGGTCAACGCTACCACCAGGAGGGCCACCACAAGAAACTGAACCACGGGAGGAAGAGCAGACAAAGCTGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.783 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.7=100)
A:
PF129312=Sec16_C=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAACCAGACCAGGAATCC
R:
TCCTCCCGTGGTTCAGTTTCT
Band lengths:
302-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]