BtaEX6047217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103945407-103946912:-
Coord C1 exon
chr11:103946682-103946912
Coord A exon
chr11:103946209-103946291
Coord C2 exon
chr11:103945407-103945538
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGCCGCGCTTCCCTCGGCAGGGG
3' ss Score
7.95
5' ss Seq
ACGGTATTT
5' ss Score
5.46
Exon sequences
Seq C1 exon
CTCCTCTGACGCTCCCCGATGGCCCAGCAGCCATTCCCGTCCGGGTGCCCATGTTCCCCGTGCCACTGCCAGGTCCTGTCGAGCTGGGGCCCGTACATGGTCCCCCAGGGGCTGTACCTGGCTTTCCAGAGCCCTCTGGGCCTGACCCTGTGGCCCTGTACCCCGGACCTGGGGTGCCACCTCTCCAGGAAACGGACCGCCTGCTCCCGGAGGCCAGGGGCCAGGACACAG
Seq A exon
GGGTGGTGCCGCAGGAGACACCCGGCAGAAGCTCGCGCTCGGAGCCGGGAGAGGAGGAGTTTGGTGGGAACTTCGCTGATACG
Seq C2 exon
GGCTCCTTCAGGACCTCACCAAGTCCCGACACGCCGCCTCAGGCCCTGCAGCTGCCTGCGCCGCTGACGCCCGCACCCGAAGCGCAGAGACCTGTCCAGGCCGCCAAGAAGGAGAGCAAGGAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCTCCAGGAAACGGA
R:
CTCCTTGCTCTCCTTCTTGGC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]