RnoEX0078962 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3866496-3868961:-
Coord C1 exon
chr3:3868716-3868961
Coord A exon
chr3:3868091-3868173
Coord C2 exon
chr3:3866496-3866645
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTTGTTTTGACAGAAA
3' ss Score
8.08
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
CTCCTCAGACATTGCCTGATGGCCAGCCTGCTCACCTTGCCAGGGTGCCCATGTTCCCAGTACCAATGTCTCGTCCCCCCCTGGAGCTGAGTGCTGCCTATGGACCCCCGGGGTCTGTACTTGGCTTCCCAGAATCCTCCAGATCTGATCCTGCAGTGCTGCATCCTGGGCAGGCCCTACCACCCGCTACACCAGGTCTCCAGGAAAGTGGGCCACCACTCCAGGAGGCCAGAAGCCCAGATCCAG
Seq A exon
AAATGGTGCCACAGGGCTCACCTGTCAGACACTCCCCTCCTGAGCCCCGTGAAGAGGAGTTTGGCAAGAACGTCGCTGACCTG
Seq C2 exon
GGCTCCTCTAGAACAGCACAGGACTCGGAAACCTCCCCAGTGTGGGATCTTGGCAGCTCCAGTCTGACACGTGCCCCATCTTTGACACCTGATTCTGAAGGGAAGAAACCTGCACAAGCTGTCAAAAAGGAGCCCAAGGAGCCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'29-32,'29-30,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACCAGGTCTCCAGGAA
R:
GCTTGTGCAGGTTTCTTCCCT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]