GgaEX1051396 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7865498-7867594:+
Coord C1 exon
chr17:7865498-7865746
Coord A exon
chr17:7866145-7866233
Coord C2 exon
chr17:7867436-7867594
Length
89 bp
Sequences
Splice sites
3' ss Seq
AGTCTGATTTTGCTTTTAAGGAA
3' ss Score
7.4
5' ss Seq
ATGGTATTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
CTCCTCAGGCTATACTTGATGGGTCAACTGCTGGGATTCCACCTAGTGACCAGGAAGCTGTCCAAAGTGTCCCTTTCTATCCTGTGGCTCCTCAGCCTATTGGTCCAGGACCTGGCTTTGCACCTCCGGGGTTTTCAAATCAGTATGGAGCTGAGCCATCGCCGCTGTATTTGGGGTCAACGCTACCACCAGGAGGGCCACCACAAGAAACTGAACCACGGGAGGAAGAGCAGACAAAGCTGGAAACAG
Seq A exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
Seq C2 exon
GGCTATGGACAGAGATCCCGGACAACTTCAGAGTCCTCTGCTCATTCTGTGGGACGAGAGAGATCTAACTCTGCAGCAAAACAGCCACCTCCTTCTCCACCTGTTCCAGTAGGGAAAGAGACTAAGAAAGAAGTGAAAAAAGAGCCAGCATCTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'25-32,'25-29,27-32
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCCTATTGGTCCAGGA
R:
TCCGGGATCTCTGTCCATAGC
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]