BtaEX6047473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105671634-105672382:+
Coord C1 exon
chr11:105671634-105671786
Coord A exon
chr11:105671864-105671974
Coord C2 exon
chr11:105672298-105672382
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGGTTCCCGTGTGTGTGCAGGAG
3' ss Score
7.42
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGCTGAACATGGCTGAGATCCAGACACGCCTGGCCTACGTGTGCTGTGTCCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACCTGCGCCCTCCGATTGACAGCTATGGCACCCTGGAGTTCAGCAAGTTTGATGAGATTTGT
Seq A exon
GAGGTGGGGTACCAGCATGGCCGGACAGTGTTTGACATCTGGGGTCGAAGCGGTGTGCTGGAGAAGATGCTGCAGGACCGGCAGGGGACAAGCAAGATGAAGGCGTGCGAC
Seq C2 exon
GTCCTCACCTGCCCCAACGCCTCCTTCACGGACCTTGCTGAGATTGTATCACGTATTGAGCCTGCCAAGGTGGCTGCAGGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126-'46-52,'46-51,47-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACATGGCTGAGATCCA
R:
TCCCCTGCAGCCACCTTG
Band lengths:
234-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]