HsaEX6064328 @ hg19
Exon Skipping
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140355988-140356783:-
Coord C1 exon
chr9:140356631-140356783
Coord A exon
chr9:140356383-140356493
Coord C2 exon
chr9:140355988-140356072
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGGGGGTGTGCACAGGAA
3' ss Score
3.77
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTGTTGAACATGGCAGAGATTCAGACGCGCCTGGCCTACGTGTGTTGCGTGCGGCAGCTGGAGGTGGTGAAGAGCAGTGACTACTGCGAGTACCTGCGCCCCCCCATCGACAGCTACAGCACCCTGGACTTCGGCAAGTTCAACGAGATCTGC
Seq A exon
GAAGTGGGCTACCAGCACGGGCGCACGGTGTTTGACATCTGGGGCCGCAGCGGCGTGCTGGAGAAGATGCTCCGCGACCAGCAGGGGCCGAGCAAGAAGCCCGCGAGTGCG
Seq C2 exon
GTCCTCACCTGTCCCAACGCCTCCTTCACGGACCTTGCCGAAATTGTGTCTCGCATTGAGCCCGCCAAGCCCGCCATGGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-'37-43,'37-42,38-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATGGCAGAGATTCAGACG
R:
CATCCACCATGGCGGGCT
Band lengths:
234-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)